Viewing the USB serial of the Arduino, send 0xAB01234567-like hex sequences to update the configured state to 0xAB and the timer to 0x01234567. Note that 0xC9 should be sent with the timer before starting a state.
The field control sequence(aka when the controller sends 0xA7) can be responded to with either a 0x02 ACK packet to acknowledge that the current values are correct, or a 0x53 packet to send new values. However, a 0x02 must be sent at least every 20 packets else the controller will restart the connect sequence.
All of the protocol reversing has been done with 1 brain & 1 controller, so any unique fields are constant and will need to be updated.